Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Yogyakarta to Kyoto as you normally would.
If you book a flight to Kyoto from Yogyakarta, you will be flying from Adisutjipto, which is the city’s only airport. Yogyakarta Adisutjipto (JOG) is located 6.8 km from the centre of Yogyakarta. There are 0 flights from Adisutjipto to Kyoto per day from 0 different airlines.
JOG and KIX are unique codes to identify airports used in the aviation industry. They are defined by IATA (International Air Transport Association) and are commonly called IATA codes. JOG to KIX refers to a flight route from Yogyakarta Adisutjipto Airport to Osaka Kansai Intl Airport. Nagoya Chubu Centrair Intl Airport (NGO), Osaka Itami Airport (ITM), Kobe Airport (UKB), Toyooka Tajima Airport (TJH) are other airports near this flight route and their unique identifiers/IATA codes.